Class InputDataValidation

• Defined in File InputDataValidation.h

Class Documentation

class InputDataValidation

Public Functions

InputDataValidation() = delete

~InputDataValidation() = delete

InputDataValidation(const InputDataValidation&) = delete

InputDataValidation &operator=(const InputDataValidation&) = delete

InputDataValidation(InputDataValidation&&) = delete

InputDataValidation &operator=(InputDataValidation&&) = delete

Public Static Functions

static bool fileExists(const std::filesystem::path &filepath)

static bool precheckProcessorInputs(const IFilenamesHandler &input_files, const std::string &processor_name, const Filenames &filenames_I, bool required)

static bool prepareToLoad(const Filenames &filenames, const std::string &id, bool check_bom)

static bool prepareToLoadOneOfTwo(const Filenames &filenames, const std::string &id1, const std::string &id2, bool check_bom)

static bool prepareToStore(const Filenames &filenames, const std::string &id)

static bool prepareToStoreOneOfTwo(const Filenames &filenames, const std::string &id1, const std::string &id2)

static std::string getSequenceInfo(const SequenceHandler &sequenceHandler)

static std::string getParametersInfo(const std::map<std::string, std::vector<std::map<std::string, std::string>>> &parameters)

static std::string getTraMLInfo(const RawDataHandler &rawDataHandler)

static std::string getFeatureFiltersInfo(const RawDataHandler &rawDataHandler, const bool is_feature_filter)

static std::string getFeatureRSDFiltersInfo(const RawDataHandler &rawDataHandler, const bool is_feature_filter)

static std::string getFeatureBackgroundFiltersInfo(const RawDataHandler &rawDataHandler, const bool is_feature_filter)

static std::string getQuantitationMethodsInfo(const SequenceSegmentHandler &sequenceSegmentHandler)

static std::string getStandardsConcentrationsInfo(const SequenceSegmentHandler &sequenceSegmentHandler)

static bool sampleNamesAreConsistent(const SequenceHandler &sequenceHandler)

static bool componentNamesAreConsistent(const SequenceHandler &sequenceHandler)

static bool componentNameGroupsAreConsistent(const SequenceHandler &sequenceHandler)

static bool heavyComponentsAreConsistent(const SequenceHandler &sequenceHandler)

static bool validateNamesInStructures(const std::set<std::string> &names1, const std::set<std::string> &names2, const std::string &structure_ref1, const std::string &structure_ref2, const bool check_both_directions = true)

static std::set<std::string> findMissingNames(const std::set<std::string> &names, const std::set<std::string> &bucket)

static std::string logMissingNames(const std::set<std::string> &missing_names, const std::string &structure_ref1, const std::string &structure_ref2)