Struct LoadRawData

Inheritance Relationships

Base Type

Struct Documentation

struct LoadRawData : public SmartPeak::RawDataProcessor

Public Functions

inline virtual std::string getName() const override

Get the processor struct name

inline virtual std::string getDescription() const override

Get the processor struct description

virtual ParameterSet getParameterSchema() const override

Get the Schema (possible, default parameters) of the processor.

virtual std::set<std::string> getOutputs() const override

Returns the list of data type produced as output.

virtual void doProcess(RawDataHandler &rawDataHandler_IO, const ParameterSet &params_I, Filenames &filenames_I) const override

Read in raw data mzML file from disk.

Depending upon user specifications, the mzML file will be mapped to the TraML file and/or various pre-processing methods will be run to extract out the data.

virtual void getFilenames(Filenames &filenames) const override

add files handled by the processor to the Filnames instance

Public Static Functions

static void extractMetaData(RawDataHandler &rawDataHandler_IO)

Extracts metadata from the chromatogram.

NOTE:

  • Not used in the current version of SmartPeak

  • Would need to be refactored or carefully implemented so as not to conflict with current injection, sample, and file naming patterns