Struct LoadSession¶

Defined in File LoadSession.h

Inheritance Relationships¶

Base Types¶

public SmartPeak::ApplicationProcessor (Struct ApplicationProcessor)
public SmartPeak::IFilePickerHandler (Struct IFilePickerHandler)

Struct Documentation¶

struct LoadSession : public SmartPeak::ApplicationProcessor, public SmartPeak::IFilePickerHandler ¶

Public Functions

virtual bool onFilePicked(const std::filesystem::path &filename, ApplicationHandler *application_handler) override¶

LoadSession() = default¶: Check consistency of data contained in files.

inline explicit LoadSession(ApplicationHandler &application_handler, WorkflowManager &workflow_manager, IApplicationProcessorObserver *application_processor_observer = nullptr, ISequenceProcessorObserver *sequence_processor_observer = nullptr, ISequenceSegmentProcessorObserver *sequence_segment_processor_observer = nullptr, ISampleGroupProcessorObserver *sample_group_processor_observer = nullptr)¶

virtual bool doProcess() override¶

inline virtual std::string getName() const override¶: Get the processor struct name

inline virtual std::string getDescription() const override¶: Get the processor struct description

Public Members

std::optional<Filenames> filenames_¶

std::optional<Filenames> filenames_override_¶: Pathnames to load - if not set, read it from session.

std::optional<ParameterSet> parameters_override_¶: Pathnames override.

std::optional<std::vector<std::string>> workflow_override_¶: Parameters override.

std::string delimiter = ","¶: Workflow override.

bool checkConsistency = true¶: String delimiter of the imported file.

Protected Functions

bool overrideFilenames()¶

bool overrideParameters()¶

bool overrideWorkflow()¶

bool readFilenames()¶

bool readInputFiles()¶

bool readLoadingWorkflow()¶

bool runLoadingWorkflow()¶

Protected Attributes

WorkflowManager &workflow_manager_¶

IApplicationProcessorObserver *application_processor_observer_¶

ISequenceProcessorObserver *sequence_processor_observer_¶

ISequenceSegmentProcessorObserver *sequence_segment_processor_observer_¶

ISampleGroupProcessorObserver *sample_group_processor_observer_¶